Markus Heinonen, Ari Rantanen, Taneli Mielikäinen, Juha Kokkonen, Jari Kiuru, Raimo A. Ketola, Juho Rousu FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data. Rapid Communications in Mass Spectrometry 22:3043-3052. Wiley, 2008.
Niels Landwehr and Taneli
Mielikäinen. Probabilistic logic learning from
haplotype data. In Luc De Raedt, Paolo Frasconi, and
Kristian Kersting: Probabilistic Inductive Logic
Programming: Theory and Application, LNCS 4911:263-286. Springer, 2008.
Pauli Miettinen, Taneli Mielikäinen, Aristides Gionis, Gautam Das, and Heikki Mannila. The Discrete Basis Problem. IEEE Transactions on Knowledge and Data Engineering 20(10):1348--1362. IEEE Computer Society, 2008.
Richard A. Hankins, Esa Eteläperä, Yiming Ma, Taneli Mielikäinen, and David Racz.
Everybit. A Community Platform for Experimenting with Mobile Data. Ninth Workshop on Mobile
Computing Systems and Applications (HotMobile 2008). ACM, 2008.
Aristides Gionis, Heikki Mannila, Taneli
Mielikäinen, and Panayiotis
Tsaparas. Assessing data mining
results via swap randomization. ACM Transactions on
Knowledge Discovery from Data 1(3):14. ACM, 2007.
Matti Kääriäinen, Niels
Landwehr, Sampsa
Lappalainen, and Taneli
Mielikäinen. Combining
haplotypers. Report C-2007-57. Department of
Computer Science, University of
Helsinki, 2007.
Hannes Heikinheimo, Eino Hinkkanen, Heikki
Mannila, Taneli
Mielikäinen, and Jouni
Seppänen. Finding low-entropy
sets and trees from binary data. In: The Thirteenth
ACM SIGKDD International Conference on Knowledge Discovery and
Data Mining (KDD 2007), pp. 350-359. ACM, 2007.
Niels
Landwehr, Taneli
Mielikäinen, Lauri Eronen, Hannu
Toivonen, and Heikki
Mannila. Constrained hidden Markov models for
population-based haplotyping. BMC
Bioinformatics 8 (Suppl
2):S9. BioMed Central, 2007.
Nikolaj Tatti, Taneli
Mielikäinen, Aristides
Gionis, and Heikki
Mannila. What is the dimension of your binary
data?. In The 2006 IEEE
Conference on Data Mining (ICDM 2006). pp. ?-?. IEEE Computer Society, 2006.
Markus
Heinonen, Ari Rantanen,
Taneli Mielikäinen, Esa Pitkänen,
Juha Kokkonen, and Juho Rousu. Ab Initio Prediction of Molecular
Fragments from Tandem Mass Spectrometry Data. In
German
Conference on Bioinformatics 2006
(GCB'06). pp. ?-?. 2006.
Taneli
Mielikäinen, Panče Panov, and Sašo
Džeroski. Itemset Support
Queries using Frequent Itemsets and Their Condensed
Representations. In Nada Lavrač
and Ljupčo
Todorovski (Eds.): Discovery Science (DS) - 9th International Conference
on Discovery Science (DS 2006), LNAI
4265:161-172. Springer, 2006.
Pauli
Miettinen, Taneli
Mielikäinen, Aristides
Gionis, Gautam
Das, and Heikki
Mannila. The Discrete Basis
Problem. In Johannes
Fürnkranz, Tobias
Scheffer, and Myra
Spiliopoulou (Eds.): Knowledge Discovery in Databases:
PKDD 2006 - 10th
European Conference on Principles and Practice of Knowledge
Discovery in Databases, LNAI
4213:335-346. Springer, 2006.
Sven
Laur, Helger
Lipmaa, and Taneli
Mielikäinen. Cryptographically
Private Support Vector Machines. In Mark Craven and
Dimitrios Gunopulos
(Eds.): The Twelfth Annual
SIGKDD International Conference on Knowledge Discovery and Data
Mining (KDD 2006). pp. 618-624. ACM, 2006.
Aristides
Gionis, Heikki
Mannila, Taneli
Mielikäinen, and Panayiotis
Tsaparas. Assessing data mining
results via swap randomization. In Mark Craven and
Dimitrios Gunopulos
(Eds.): The Twelfth Annual
SIGKDD International Conference on Knowledge Discovery and Data
Mining (KDD 2006). pp. 157-176. ACM, 2006. (The code
is available.)
Taneli
Mielikäinen, Evimaria
Terzi, and Panayiotis
Tsaparas. Aggregating Time
Partitions. In Mark Craven and
Dimitrios Gunopulos
(Eds.): The Twelfth Annual
SIGKDD International Conference on Knowledge Discovery and Data
Mining (KDD 2006). pp. 347-356. ACM, 2006.
Niels
Landwehr, Taneli
Mielikäinen, Lauri Eronen, Hannu
Toivonen, and Heikki
Mannila. Constrained Hidden Markov
Models for Population-based Haplotyping (Extended
Abstract). In: Probabilistic
Modeling and Machine Learning in Structural and Systems
Biology (PMSB 2006). pp.
38-43. 2006.
(The program
is available.)
Ari
Rantanen, Taneli
Mielikäinen, Juho Rousu,
Hannu Maaheimo, and Esko Ukkonen. Planning optimal measurements of
isotopomer distributions for estimation of metabolic
fluxes. Bioinformatics
22(10):1198-1206. Oxford University Press, 2006.
Taneli
Mielikäinen. Frequency-Based Views
to Pattern Collections. Discrete
Applied Mathematics, 154(7):1113-1139. Elsevier, 2006. (The code is available.)
Taneli
Mielikäinen. Transaction databases,
Frequent Itemsets, and Their Condensed Representations.
In Francesco
Bonchi and Jean-François
Boulicaut (Eds.): Fourth International
Workshop on Knowledge Discovery in Inductive Databases
(KDID 2005). LNCS
3933:139-164.
Springer, 2006.
Taneli
Mielikäinen and Esko Ukkonen.
The Complexity of Maximum
Matroid-Greedoid Intersection and Weighted Greedoid
Maximization. Discrete
Applied Mathematics, 154(4):684-691. Elsevier, 2006.
Sven
Laur, Helger
Lipmaa, and Taneli
Mielikäinen. Private Itemset Support
Counting. In Sihan Qing, Wenbo Mao, Javier Lopez, and
Guilin Wang (Eds.): Seventh International
Conference on Information and Communications Security
(ICICS '05). LNCS
3783:97-111.
Springer, 2005.
Foto
Afrati, Gautam
Das, Aristides
Gionis, Heikki
Mannila, Taneli
Mielikäinen, and Panayiotis
Tsaparas. Mining Chains of
Relations. In Jiawei Han, Benjamin Wah, and Xindong Wu
(Eds.): The
5th IEEE International Conference on Data Mining (ICDM
2005). pp.
553-556.
IEEE Computer Society, 2005.
Taneli
Mielikäinen. Summarization
Techniques for Pattern Collections in Data Mining. PhD
Thesis. Report A-2005-1.
Department of
Computer Science, University of
Helsinki, 2005.
Ari
Rantanen, Taneli
Mielikäinen, Juho Rousu, and
Esko
Ukkonen. Planning
isotopomer measurements for estimation of metabolic
fluxes. In German
Conference on Bioinformatics 2005
(GCB'05). pp. 177-191. 2005.
Taneli
Mielikäinen and Janne
Ravantti. Sinogram Denoising of
Cryo-Electron Microscopy Images. In Osvaldo Gervasi,
Marina L. Gavrilova, Vipin Kumar, Antonio Laganà, Heow Pueh
Lee, Youngsong Mun, David Taniar, Chih Jeng Kenneth Tan (Eds.):
International Conference on
Computational Science and Its Applications (ICCSA
2005). LNCS
3483:1251-1261.
Springer, 2005.
Bart
Goethals, Sven
Laur, Helger
Lipmaa, and Taneli
Mielikäinen. On Private Scalar
Product Computation for Privacy-Preserving Data
Mining. In Choonsik Park and Seongtaek Chee (Eds.):
7th International
Conference on Information Security and Cryptology (ICISC
2004). LNCS
3506:104-120.
Springer, 2005.
Taneli
Mielikäinen. An Automata
Approach to Pattern Collections. In Bart Goethals
and Arno
Siebes (Eds.): Third International
Workshop on Knowledge Discovery in Inductive Databases
(KDID 2004). LNCS
3377:130-149.
Springer, 2005.
Taneli
Mielikäinen. Implicit
Enumeration of Patterns. In Bart Goethals
and Arno
Siebes (Eds.): Third International
Workshop on Knowledge Discovery in Inductive Databases
(KDID 2004). LNCS
3377:150-172.
Springer, 2005.
Taneli
Mielikäinen. Privacy Problems
with Anonymized Transaction Databases. In Setsuo Arikawa
and Einoshin
Suzuki (Eds.): Discovery Science (DS) - 7th International
Conference on Discovery Science (DS 2004), LNAI
3245:219-229.
Springer, 2004.
(The code is
available.)
Floris
Geerts, Bart
Goethals, Taneli
Mielikäinen. Tiling
Databases. In Setsuo Arikawa
and Einoshin
Suzuki (Eds.): Discovery Science (DS) - 7th International
Conference on Discovery Science (DS 2004), LNAI
3245:278-289.
Springer, 2004.
Taneli
Mielikäinen. Inductive Databases
as Ranking. In Yahiko
Kambayashi, Mukesh Mohania and Wolfram
Wöß (Eds.): Data Warehousing and Knowledge
Discovery - 7th
International Conference on Data Warehousing and Knowledge
Discovery (DaWaK 2004), LNCS
3181:149-158.
Springer, 2004.
Taneli
Mielikäinen. Discovery of
Serial Episodes from Streams of Events. In Michael Hatzopoulos and
Yannis
Manolopoulos (Eds.) 16th International
Conference on Scientific and Statistical Database
Management (SSBDM 2004), pp.
447-448. IEEE Computer Society, 2004.
Taneli
Mielikäinen and Esko Ukkonen.
The Complexity of Maximum
Matroid-Greedoid Intersection and Weighted Greedoid
Maximization. Report C-2004-2. Department of
Computer Science, University of
Helsinki, 2004.
Taneli
Mielikäinen, Janne
Ravantti and Esko
Ukkonen. The Computational Complexity of Orientation
Search Problems in Cryo-Electron Microscopy. Report C-2004-3. Department of
Computer Science, University of
Helsinki, 2004.
Taneli
Mielikäinen, Janne
Ravantti, and Esko Ukkonen.
The Computational Complexity of
Orientation Search in Cryo-Electron Microscopy. In Marian
Bubak, G. Dick
van Albada, Peter
M. A. Sloot, and Jack
J. Dongarra (Eds.): Computational Science - International
Conference on Computational Science (ICCS 2004). LNCS
3036:
231-238. Springer, 2004.
Taneli
Mielikäinen. Separating
Structure from Interestingness. In Honghua Dai, Ramakrishnan
Srikant, and Chengqi
Zhang (Eds.): Advances in Knowledge Discovery and Data
Mining - 8th
Pacific-Asia Conference on Knowledge Discovery and Data
Mining (PAKDD 2004). LNAI
3056:476-485. Springer, 2004
Taneli
Mielikäinen. Change
Profiles. In Xindong Wu and
Alex
Tuzhilin (Eds.): Third IEEE
International Conference on Data Mining (ICDM 2003).
pp.
219-226. IEEE Computer Society, 2003.
Taneli
Mielikäinen. On Inverse Frequent
Set Mining. In Wenliang Du and Christopher
W. Clifton (Eds.): 2nd Workshop on
Privacy Preserving Data Mining (PPDM 2003). pp.
18-23
IEEE Computer Society, 2003.
Taneli
Mielikäinen. Intersecting Data
to Closed Sets with Constraints. In Bart Goethals
and Mohammed Zaki
(Eds.): Workshop on
Frequent Itemset Mining Implementations (FIMI'03). CEUR Workshop Proceedings 90, 2003. (The code is available.)
Taneli
Mielikäinen. Chaining
Patterns. In Gunter
Grieser, Yuzuru
Tanaka and Akihiro
Yamamoto (Eds.): Discovery Science (DS) - 6th
International Conference on Discovery Science (DS 2003)
, LNAI
2843:233-244. Springer, 2003.
Taneli
Mielikäinen and Heikki
Mannila The Pattern Ordering
Problem. In N. Lavrac, D. Gamberger, L. Todorovski and H. Blockeel
(Eds.): Knowledge Discovery in Databases: PKDD 2003 - 7th
European Conference on Principles and Practice of Knowledge
Discovery in Databases, LNAI
2838:327-338. Springer, 2003.
Taneli
Mielikäinen. Finding All
Occurring Sets of Interest. In Jean-François Boulicaut
and Sašo Džeroski
(Eds.): 2nd
International Workshop on Knowledge Discovery in Inductive
Databases (KDID'03). pp. 97-106. 2003.
Floris
Geerts, Bart
Goethals and Taneli
Mielikäinen. What You Store
Is What You Get (extended abstract). In Jean-François Boulicaut
and Sašo Džeroski
(Eds.): 2nd
International Workshop on Knowledge Discovery in Inductive
Databases (KDID'03). pp. 60-69. 2003.
Taneli
Mielikäinen. Läpivalaisukuvien
orientointi. Master's Thesis. Report C-2002-14.
Department of
Computer Science, University of
Helsinki, 2002.
Taneli
Mielikäinen. Frequency-Based
Views to Pattern Collections. In P. L. Hammer
(Ed.): IFIP/SIAM Workshop on
Discrete Mathematics and Data Mining (DM & DM
2003). 2003.
Taneli
Mielikäinen and Esko Ukkonen.
The Complexity of Maximum
Matroid-Greedoid Intersection. In R. Freivalds
(Ed.): Fundamentals
of Computation Theory (FCT 2001). LNCS
2138:535-539. Springer, 2001.
|